The First Annual RECOMB Satellite Workshop on Systems Biology
The Second Annual RECOMB Satellite Workshop on Regulatory Genomics

A Comprehensive Kinetic Model Of The Exocytotic Process: Evaluation Of The Reaction Mechanism

Mezer Aviv, Bosis Eran, Ashery Uri, Nachliel Esther and Gutman Menachem

Tel Aviv University

Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis

Chih-Yu Chen, Von-Wun Soo, Chi-Li Kuo

Nat. Tsing Hua University

An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome

Weihui Wu, Yongling Song, Shouguang Jin, Su-Shing Chen

University of Florida

Genome-wide discovery of modulators of transcriptional interactions in human B lymphocytes

Kai Wang, Ilya Nemenman, Nilanjana Banerjee, Andrea Califano

Columbia University

Probabilistic In Silico Prediction of Protein-Peptide Interactions

Wolfgang Lehrach and Dirk Husmeier

University of Edinburgh, UK

Topological Robustness of the Protein-protein Interaction Networks

Chien-Hung Huang, Jywe-Fei Fang, Jeffrey J.P. Tsai, Ka-Lok Ng*

National Formosa University, Taiwan.

Statistical Significance Criteria Revisted

Mireille Regnier and Mathias Vandenbogaert

INRIA Rocquencourt

Annotation of promoter regions in microbial genomes based on DNA structural and sequence properties

Huiquan Wang and Craig J. Benham

UC Davis Genome Center, University of California

An Interaction-dependent model for transcription factor binding

Li-San Wang, Shane Jensen, and Sridhar Hannenhalli

University of Pennsylvania

Genome-wide Identication of Regulatory DNA Sequence Elements:A Steganalysis-based Approach

Guandong Wang and Weixiong Zhang

Washington University, Saint Louis

Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations

Elena Zotenko, Katia S. Guimar˜aes Raja Jothi, and Teresa M. Przytycka

NCBI/NLM/NIH

The Pathalyzer: a tool for visualization and analysis of signal transduction pathways

D. L. Dill, M.A. Knapp, P. Gage, Carolyn Talcott, P. Lincoln, and K. Landeroute

Stanford and SRI

Improvement of Computing Times in Boolean Networks Using Chi-square Tests

Haseong Kim,, Jae K. Lee and Taesung Park

Seoul National University

Characterization of the Promoters of MicroRNA Genes: A Genome-Scale Analysis on Three Model Species

Xuefeng Zhou, Jianhua Ruan, Guandong Wang and Weixiong Zhang

Washington University, Saint Louis

Improved Pattern-driven Algorithms for Motif Finding in DNA Sequences

Sing-Hoi Sze and Xiaoyan Zhao

Texas A&M University

Characterization of the effects of TF binding site variations on gene expression. Towards predicting the functional outcomes of regulatory SNPs

Michal Lapidot and Yitzhak Pilpel

Weizmann Institute of Science

Phenotypic divergence correlates with translational control signals in protein coding sequences in yeast species

Orna Man and Yitzhak Pilpel

Weizmann Institute of Science

Backup by paralogs decouples genes lethality from centrality: evidence for preferential backup of hubs

Ran Kafri and Yitzhak Pilpel

The Weizmann Institute of Science

Comparative systems biology of the sporulation initiation network in prokaryotes

Michiel de Hoon and Dennis Vitkup

Columbia University

Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data

Elissa J. Chesler and Michael A. Langston

Oak Ridge National Laboratory

A Bayesian Approach for Integrating Transcription Regulation and Gene Expression: Application to Saccharomyces Cerevisiae Cell Cycle Data

Sudhakar Jonnalagadda and Rajagopalan Srinivasan

National University of Singapore

Causal inference of regulator-target pairs by gene mapping of expression phenotypes

David Kulp & Manjunatha Jagalur

University of Massachusetts

Improved Duplication Models for Proteome Network Evolution

G. Bebek, P. Berenbrink, C. Cooper, T. Friedetzky, J.H. Nadeau, and S.C. Sahinalp

Case Western Reserve University

Comparison of protein-protein interaction confidence assignment schemes

Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker

University of California, San Diego